Zeitler L, Gilbert KJ (Submitted) Using runs of homozygosity and machine learning to disentangle sources of inbreeding and infer self-fertilization rates. BiorXiv, doi: https://www.biorxiv.org/content/10.1101/2024.02.20.581206v1
Preprint
Zeitler L, Parisod C, Gilbert KJ (2023) Purging due to self-fertilization does not prevent accumulation of expansion load. PLOS Genetics, 19(9), e1010883, doi: https://doi.org/10.1371/journal.pgen.1010883
Preprint
Roesti M, Gilbert KJ, Samuk K (2022) Chromosomal inversions can limit adaptation to new environments. Molecular Ecology, 31(17), 4435-4439, doi: https://doi.org/10.1111/mec.16609
Preprint
Gilbert KJ, Moinet A, Peischl S (2022) Gene surfing of underdominant alleles promotes formation of hybrid zones. Philosophical Transactions of the Royal Society B, 377(1846), 20210006, doi: https://doi.org/10.1098/rstb.2021.0006
Preprint
Gilbert KJ, Zdraljevic S, Cook DE, Cutter AD, Andersen EC, Baer CF (2022) The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation Genetics, 220(1), iyab166, doi: https://doi.org/10.1093/genetics/iyab166
Preprint
Altenhoff AM, Train C-M, Gilbert KJ, Mediratta I, Mendes de Farias T, Moi D, Nevers Y, Radoykova H-S, Rossier V, Warwick Vesztrocy A, Glover NM, Dessimoz C (2021) OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order, and more. Nucleic Acids Research, 49(D1), D373-379, doi:10.1093/nar/gkaa1007
Pouyet F, Gilbert KJ (2021) Towards an improved understanding of molecular evolution: the relative roles of selection, drift, and everything in between. Peer Community Journal, 1:e27, doi: https://doi.org/10.24072/pcjournal.16
ArXiv
Gilbert KJ, Pouyet F, Excoffier L, Peischl S (2020) Transition from background selection to associative overdominance promotes diversity in regions of low recombination. Current Biology, 30(1), 101-107.e3
Preprint Data archive
Peischl S, Gilbert KJ (2020) Evolution of dispersal can rescue populations from expansion load. The American Naturalist, 195(2), 000-000.
Preprint
Gilbert KJ, Peischl S, Excoffier L (2018) Mutation load dynamics during environmentally-driven range shifts. PLOS Genetics, 14(9): e1007450. doi:10.1371/journal.pgen.1007450.
Preprint Simulation code
Antonovics J, Abbate J, Bruns E, Fields PD, Forrester N, Gilbert KJ, Hood M, Park T, Taylor DR (2018) Effect of the anther-smut fungus Microbotryum on the juvenile growth of its host Silene latifolia. American Journal of Botany, 105(6), 1088-1095.
Peischl S, Dupanloup I, Foucal A, Jomphe M, Bruat V, Grenier J-C, Gouy A, Gilbert KJ, Gbeha E, Bosshard L, Hip-Ki E, Agbessi M, Hodgkinson A, Vézina H, Awadalla P, Excoffier L (2017) Relaxed selection during a recent human expansion. Genetics, 208(2), 763-777, genetics.300551.2017
Gilbert KJ, MC Whitlock. (2018) The genetics of adaptation to discrete heterogeneous environments: Frequent mutation or large effect alleles can allow range expansion. Journal of Evolutionary Biology, 30(3), 591-602, doi:10.1111/jeb.13029.
Dryad data Modified Nemo code aNEMOne
Gilbert KJ, NP Sharp, AL Angert, GL Conte, JA Draghi, F Guillaume, AL Hargreaves, R Matthey-Doret, MC Whitlock. (2017) Local adaptation interacts with expansion load during range expansion: Maladaptation reduces expansion load. The American Naturalist, 189(4), 368-380, doi:10.1086/690673.
Dryad data Modified Nemo code aNEMOne
Gilbert KJ (2016) Identifying the number of population clusters with STRUCTURE: Problems and solutions. Molecular Ecology Resources, 16, 601-603.
Gilbert KJ, MC Whitlock (2015) Evaluating methods for estimating local effective population size with and without migration. Evolution, 68, 2154-2166.
Dryad data Code on GitHub Supplemental material
Santiso X, L Lopez, KJ Gilbert, R Barreiro, MC Whitlock, R Retuerto (2015) Patterns of genetic variation within and among populations in Arbutus unedo and its relation with selection and evolvability. Perspectives in Plant Ecology, Evolution and Systematics, 17, 185-192, doi:10.1016/j.ppees.2015.02.006.
Supplemental material
Gilbert KJ, MC Whitlock (2015) QST FST comparisons with unbalanced half-sib designs. Molecular Ecology Resources, 15, 262-267.
R package Dryad data
Caplins SA, KJ Gilbert, C Ciotir, J Roland, SF Matter, N Keyghobadi (2014) Landscape structure and the genetic effects of a population collapse. Proceedings of the Royal Society B. 281: 20141798; doi: 10.1098/rspb.2014.1798
Press Supplemental material
Vines TH, AYK Albert, RL Andrew, F Débarre, DG Bock, MT Franklin, KJ Gilbert, J-S Moore, S Renaut, DJ Rennison (2014) The availability of research data declines rapidly with article age. Current Biology, 24, 94-97.
Press Pre-print Supplemental material
Vines TH, RL Andrew, DG Bock, MT Franklin, KJ Gilbert, NC Kane, J-S Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, S Yeaman (2013) Mandated archiving greatly improves access to research data. FASEB Journal, 27, 1304-1308.
Pre-print
Gilbert KJ, RL Andrew, DG Bock, MT Franklin, NC Kane, J-S Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, TH Vines (2012) Recommendations for utilizing and reporting population genetic analyses: The reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology, 21, 4925-4930.
Appendix S1 Table S1
Keller SR, KJ Gilbert, PD Fields, DR Taylor (2012) Bayesian inference of a complex invasion history revealed by nuclear and chloroplast genetic diversity in the colonizing plant, Silene latifolia. Molecular Ecology, 21, 4721-4734.
Dryad data Supplemental material
Whitlock MC, KJ Gilbert (2012) QST in a hierarchically structured population. Molecular Ecology Resources, 12, 481-483.