Publications

    My Google scholar page
    My full CV
    My PhD dissertation

 

Zeitler L, Gilbert KJ (2024) Using runs of homozygosity and machine learning to disentangle sources of inbreeding and infer self-fertilization rates. Genome Biology and Evolution, 16(7), evae139, doi: https://doi.org/10.1093/gbe/evae139      Preprint

Zeitler L, Parisod C, Gilbert KJ (2023) Purging due to self-fertilization does not prevent accumulation of expansion load. PLOS Genetics, 19(9), e1010883, doi: https://doi.org/10.1371/journal.pgen.1010883
     Preprint

Roesti M, Gilbert KJ, Samuk K (2022) Chromosomal inversions can limit adaptation to new environments. Molecular Ecology, 31(17), 4435-4439, doi: https://doi.org/10.1111/mec.16609
     Preprint

Gilbert KJ, Moinet A, Peischl S (2022) Gene surfing of underdominant alleles promotes formation of hybrid zones. Philosophical Transactions of the Royal Society B, 377(1846), 20210006, doi: https://doi.org/10.1098/rstb.2021.0006
     Preprint

Gilbert KJ, Zdraljevic S, Cook DE, Cutter AD, Andersen EC, Baer CF (2022) The distribution of mutational effects on fitness in Caenorhabditis elegans inferred from standing genetic variation Genetics, 220(1), iyab166, doi: https://doi.org/10.1093/genetics/iyab166
     Preprint

Altenhoff AM, Train C-M, Gilbert KJ, Mediratta I, Mendes de Farias T, Moi D, Nevers Y, Radoykova H-S, Rossier V, Warwick Vesztrocy A, Glover NM, Dessimoz C (2021) OMA orthology in 2021: website overhaul, conserved isoforms, ancestral gene order, and more. Nucleic Acids Research, 49(D1), D373-379, doi:10.1093/nar/gkaa1007

Pouyet F, Gilbert KJ (2021) Towards an improved understanding of molecular evolution: the relative roles of selection, drift, and everything in between. Peer Community Journal, 1:e27, doi: https://doi.org/10.24072/pcjournal.16
     ArXiv

Gilbert KJ, Pouyet F, Excoffier L, Peischl S (2020) Transition from background selection to associative overdominance promotes diversity in regions of low recombination. Current Biology, 30(1), 101-107.e3
     Preprint  Data archive

Peischl S, Gilbert KJ (2020) Evolution of dispersal can rescue populations from expansion load. The American Naturalist, 195(2), 000-000.
     Preprint

Gilbert KJ, Peischl S, Excoffier L (2018) Mutation load dynamics during environmentally-driven range shifts. PLOS Genetics, 14(9): e1007450. doi:10.1371/journal.pgen.1007450.
     Preprint  Simulation code

Antonovics J, Abbate J, Bruns E, Fields PD, Forrester N, Gilbert KJ, Hood M, Park T, Taylor DR (2018) Effect of the anther-smut fungus Microbotryum on the juvenile growth of its host Silene latifolia. American Journal of Botany, 105(6), 1088-1095.

Peischl S, Dupanloup I, Foucal A, Jomphe M, Bruat V, Grenier J-C, Gouy A, Gilbert KJ, Gbeha E, Bosshard L, Hip-Ki E, Agbessi M, Hodgkinson A, Vézina H, Awadalla P, Excoffier L (2017) Relaxed selection during a recent human expansion. Genetics, 208(2), 763-777, genetics.300551.2017

Gilbert KJ, MC Whitlock. (2018) The genetics of adaptation to discrete heterogeneous environments: Frequent mutation or large effect alleles can allow range expansion. Journal of Evolutionary Biology, 30(3), 591-602, doi:10.1111/jeb.13029.
     Dryad data  Modified Nemo code  aNEMOne

Gilbert KJ, NP Sharp, AL Angert, GL Conte, JA Draghi, F Guillaume, AL Hargreaves, R Matthey-Doret, MC Whitlock. (2017) Local adaptation interacts with expansion load during range expansion: Maladaptation reduces expansion load. The American Naturalist, 189(4), 368-380, doi:10.1086/690673.
     Dryad data  Modified Nemo code  aNEMOne

Gilbert KJ (2016) Identifying the number of population clusters with STRUCTURE: Problems and solutions. Molecular Ecology Resources, 16, 601-603.

Gilbert KJ, MC Whitlock (2015) Evaluating methods for estimating local effective population size with and without migration. Evolution, 68, 2154-2166.
     Dryad data  Code on GitHub  Supplemental material

Santiso X, L Lopez, KJ Gilbert, R Barreiro, MC Whitlock, R Retuerto (2015) Patterns of genetic variation within and among populations in Arbutus unedo and its relation with selection and evolvability. Perspectives in Plant Ecology, Evolution and Systematics, 17, 185-192, doi:10.1016/j.ppees.2015.02.006.
     Supplemental material

Gilbert KJ, MC Whitlock (2015) QST FST comparisons with unbalanced half-sib designs. Molecular Ecology Resources, 15, 262-267.
     R package   Dryad data

Caplins SA, KJ Gilbert, C Ciotir, J Roland, SF Matter, N Keyghobadi (2014) Landscape structure and the genetic effects of a population collapse. Proceedings of the Royal Society B. 281: 20141798; doi: 10.1098/rspb.2014.1798
     Press   Supplemental material

Vines TH, AYK Albert, RL Andrew, F Débarre, DG Bock, MT Franklin, KJ Gilbert, J-S Moore, S Renaut, DJ Rennison (2014) The availability of research data declines rapidly with article age. Current Biology, 24, 94-97.
     Press   Pre-print   Supplemental material

Vines TH, RL Andrew, DG Bock, MT Franklin, KJ Gilbert, NC Kane, J-S Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, S Yeaman (2013) Mandated archiving greatly improves access to research data. FASEB Journal, 27, 1304-1308.
     Pre-print

Gilbert KJ, RL Andrew, DG Bock, MT Franklin, NC Kane, J-S Moore, BT Moyers, S Renaut, DJ Rennison, T Veen, TH Vines (2012) Recommendations for utilizing and reporting population genetic analyses: The reproducibility of genetic clustering using the program STRUCTURE. Molecular Ecology, 21, 4925-4930.
     Appendix S1   Table S1

Keller SR, KJ Gilbert, PD Fields, DR Taylor (2012) Bayesian inference of a complex invasion history revealed by nuclear and chloroplast genetic diversity in the colonizing plant, Silene latifolia. Molecular Ecology, 21, 4721-4734.
     Dryad data   Supplemental material

Whitlock MC, KJ Gilbert (2012) QST in a hierarchically structured population. Molecular Ecology Resources, 12, 481-483.